{
  "started_at": "2026-06-26T19:13:26.740537+00:00",
  "duration_seconds": 774.81,
  "model": "kimi-k2.6:cloud",
  "provider": "custom",
  "auto_transitions": {
    "marked_stale": 0,
    "archived": 0,
    "reactivated": 0,
    "checked": 11,
    "seeded": 0
  },
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    "after": 9,
    "delta": -2,
    "archived_this_run": 2,
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    "consolidated_this_run": 2,
    "pruned_this_run": 0,
    "state_transitions": 0,
    "cron_jobs_rewritten": 0,
    "tool_calls_total": 64
  },
  "tool_call_counts": {
    "skills_list": 1,
    "skill_view": 12,
    "read_file": 11,
    "terminal": 33,
    "patch": 5,
    "skill_manage": 2
  },
  "archived": [
    "codebase-inspection",
    "hermes-agent-skill-authoring"
  ],
  "consolidated": [
    {
      "name": "codebase-inspection",
      "into": "github-pr-workflow",
      "source": "absorbed_into (model-declared at delete)",
      "reason": "pygount-based repo metrics naturally belong as a subsection under the GitHub end-to-end umbrella"
    },
    {
      "name": "hermes-agent-skill-authoring",
      "into": "hermes-agent",
      "source": "absorbed_into (model-declared at delete)",
      "reason": "in-repo SKILL.md authoring conventions are a contributor-topic subsection of the main Hermes Agent umbrella"
    }
  ],
  "pruned": [],
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  "cron_rewrites": {
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  },
  "llm_final": "I have completed the consolidation pass. Here is the full summary.\n\n## Human-readable summary\n\n### Candidate set\nOnly **11 agent-created skills** were in scope (bundled/hub skills excluded per rule). Scanning for prefix clusters across these 11:\n\n**Identified clusters:**\n- **`github-*`** cluster: `github-pr-workflow` (broad umbrella), `codebase-inspection` (narrow pygount metrics skill)\n- **`hermes-*`** cluster: `hermes-agent` (massive umbrella, 46 KB), `hermes-agent-skill-authoring` (narrow in-repo SKILL.md conventions)\n- **`research-*`** cluster: `research-paper-writing`, `research-toolkit` — different workflows (academic paper pipeline vs external data monitoring). Not merged.\n- **`productivity-*`** cluster: `cronos-outreach`, `job-search-toolkit`, `productivity-toolkit` — all distinct domains (Belgian IT outreach, job-search comms, SaaS integrations). Not merged.\n- **Singletons**: `dogfood`, `himalaya`, `jupyter-live-kernel`, `obsidian`, `xurl` — no cluster-mates.\n\n### Consolidations performed (2)\n\n**1. `codebase-inspection` → `github-pr-workflow`**\n- `github-pr-workflow` is already a class-level umbrella covering auth, repos, issues, PRs, reviews, CI/CD, and releases.\n- `codebase-inspection` (pygount-based LOC/language analysis) is a natural \"repo metrics\" subsection within that umbrella.\n- Patched `github-pr-workflow/SKILL.md` to add a new **Section 6: Codebase Metrics & Inspection** with all pygount recipes, exclusions, output formats, and pitfalls from the narrow skill.\n- Updated the umbrella description to include \"codebase metrics\".\n- No support files needed — `codebase-inspection` had only a standalone `SKILL.md`.\n- `codebase-inspection` archived via `skill_manage(action='delete')`.\n\n**2. `hermes-agent-skill-authoring` → `hermes-agent`**\n- `hermes-agent` is a massive class-level umbrella (46 KB) covering setup, configuration, CLI, gateway, multi-agent spawning, cron, webhooks, profiles, etc.\n- `hermes-agent-skill-authoring` (in-repo SKILL.md frontmatter/structure conventions) naturally belongs under a \"Contributor\" section.\n- Patched `hermes-agent/SKILL.md` to add a new **Section: Authoring In-Repo Skills** with frontmatter requirements, peer-matched structure, directory placement, creation workflow, editing workflow, cross-referencing, and pitfalls.\n- Updated the umbrella description to include \"author skills\".\n- No support files needed — `hermes-agent-skill-authoring` had only a standalone `SKILL.md`.\n- `hermes-agent-skill-authoring` archived via `skill_manage(action='delete')`.\n\n### Skills left alone (9) — already class-level umbrellas\n- `dogfood` — standalone QA testing umbrella\n- `github-pr-workflow` — already an umbrella, now expanded\n- `hermes-agent` — already an umbrella, now expanded\n- `himalaya` — standalone email CLI umbrella\n- `job-search-toolkit` — standalone job-search comms umbrella\n- `jupyter-live-kernel` — standalone data-science REPL umbrella\n- `obsidian` — standalone note-taking umbrella\n- `research-paper-writing` — standalone academic paper pipeline umbrella\n- `xurl` — standalone social-media CLI umbrella\n\nThese have no siblings sharing a real domain workflow. Forcing them into artificial umbrellas would degrade discoverability.\n\n## Structured summary (required)\n```yaml\nconsolidations:\n  - from: codebase-inspection\n    into: github-pr-workflow\n    reason: pygount-based repo metrics naturally belong as a subsection under the GitHub end-to-end umbrella\n  - from: hermes-agent-skill-authoring\n    into: hermes-agent\n    reason: in-repo SKILL.md authoring conventions are a contributor-topic subsection of the main Hermes Agent umbrella\nprunings: []\n```",
  "llm_summary": "I have completed the consolidation pass. Here is the full summary.\n\n## Human-readable summary\n\n### Candidate set\nOnly **11 agent-created skills** were in scope (bundled/hub skills excluded per rule). Scanning for prefix clusters across thes…",
  "llm_error": null,
  "tool_calls": [
    {
      "name": "skills_list",
      "arguments": "{}"
    },
    {
      "name": "skill_view",
      "arguments": "{\"name\":\"codebase-inspection\"}"
    },
    {
      "name": "skill_view",
      "arguments": "{\"name\":\"dogfood\"}"
    },
    {
      "name": "skill_view",
      "arguments": "{\"name\":\"github-pr-workflow\"}"
    },
    {
      "name": "skill_view",
      "arguments": "{\"name\":\"hermes-agent\"}"
    },
    {
      "name": "skill_view",
      "arguments": "{\"name\":\"hermes-agent-skill-authoring\"}"
    },
    {
      "name": "skill_view",
      "arguments": "{\"name\":\"himalaya\"}"
    },
    {
      "name": "skill_view",
      "arguments": "{\"name\":\"job-search-toolkit\"}"
    },
    {
      "name": "skill_view",
      "arguments": "{\"name\":\"jupyter-live-kernel\"}"
    },
    {
      "name": "skill_view",
      "arguments": "{\"name\":\"obsidian\"}"
    },
    {
      "name": "skill_view",
      "arguments": "{\"name\":\"research-paper-writing\"}"
    },
    {
      "name": "skill_view",
      "arguments": "{\"name\":\"xurl\"}"
    },
    {
      "name": "read_file",
      "arguments": "{\"path\":\"/home/thesage/.hermes/skills/github/github-pr-workflow/SKILL.md\",\"offset\":1,\"limit\":50}"
    },
    {
      "name": "read_file",
      "arguments": "{\"offset\":1,\"limit\":50,\"path\":\"/home/thesage/.hermes/skills/autonomous-ai-agents/hermes-agent/SKILL.md\"}"
    },
    {
      "name": "read_file",
      "arguments": "{\"path\":\"/home/thesage/.hermes/skills/research/research-paper-writing/SKILL.md\",\"limit\":30,\"offset\":1}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"ls -la /home/thesage/.hermes/skills/productivity/job-search-toolkit/\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"ls -la /home/thesage/.hermes/skills/note-taking/obsidian/\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"ls -la /home/thesage/.hermes/skills/github/codebase-inspection/\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"ls -la /home/thesage/.hermes/skills/research/research-paper-writing/\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"ls -la /home/thesage/.hermes/skills/social-media/xurl/\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"ls -la /home/thesage/.hermes/skills/data-science/jupyter-live-kernel/\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"ls -la /home/thesage/.hermes/skills/dogfood/\"}"
    },
    {
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    },
    {
      "name": "read_file",
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    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"ls -la /home/thesage/.hermes/skills/research/research-paper-writing/references/\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"ls -la /home/thesage/.hermes/skills/research/research-paper-writing/templates/\"}"
    },
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      "name": "terminal",
      "arguments": "{\"command\":\"ls -la /home/thesage/.hermes/skills/email/himalaya/references/\"}"
    },
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      "arguments": "{\"path\":\"/home/thesage/.hermes/skills/github/codebase-inspection/SKILL.md\",\"limit\":200,\"offset\":1}"
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    {
      "name": "read_file",
      "arguments": "{\"path\":\"/home/thesage/.hermes/skills/software-development/hermes-agent-skill-authoring/SKILL.md\",\"limit\":200,\"offset\":1}"
    },
    {
      "name": "read_file",
      "arguments": "{\"path\":\"/home/thesage/.hermes/skills/github/github-pr-workflow/SKILL.md\",\"limit\":10,\"offset\":491}"
    },
    {
      "name": "read_file",
      "arguments": "{\"limit\":10,\"offset\":1019,\"path\":\"/home/thesage/.hermes/skills/autonomous-ai-agents/hermes-agent/SKILL.md\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"ls -la /home/thesage/.hermes/skills/github/github-pr-workflow/references/ /home/thesage/.hermes/skills/github/github-pr-workflow/templates/ /home/thesage/.hermes/skills/github/github-pr-workflow/scripts/ 2\\u003e/dev/null\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"ls -la /home/thesage/.hermes/skills/autonomous-ai-agents/hermes-agent/references/ 2\\u003e/dev/null\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"ls -la /home/thesage/.hermes/skills/productivity/job-search-toolkit/references/ /home/thesage/.hermes/skills/productivity/job-search-toolkit/templates/ 2\\u003e/dev/null\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"ls -la /home/thesage/.hermes/skills/productivity/job-search-toolkit/templates/ 2\\u003e/dev/null\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"ls -la /home/thesage/.hermes/skills/dogfood/references/ /home/thesage/.hermes/skills/dogfood/templates/ 2\\u003e/dev/null\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"ls -la /home/thesage/.hermes/skills/note-taking/obsidian/references/ /home/thesage/.hermes/skills/note-taking/obsidian/scripts/ 2\\u003e/dev/null\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"mkdir -p /home/thesage/.hermes/skills/.archive\"}"
    },
    {
      "name": "skill_view",
      "arguments": "{\"name\":\"codebase-inspection\"}"
    },
    {
      "name": "patch",
      "arguments": "{\"mode\":\"replace\",\"path\":\"/home/thesage/.hermes/skills/github/github-pr-workflow/SKILL.md\",\"old_string\":\"---\\n\\n## 6. Support Files\\n\\n- `scripts/github-auth-env.sh` — Bash helper that detects auth method and sets environment variables\\n- `references/conventional-commits.md` — Commit format guide with types and examples\\n- `references/ci-troubleshooting.md` — Diagnose test, lint, build, permission…"
    },
    {
      "name": "patch",
      "arguments": "{\"mode\":\"replace\",\"new_string\":\"description: \\\"GitHub end-to-end: auth, repos, issues, PR lifecycle, code review, CI/CD, releases, codebase metrics. Covers gh and git+curl fallbacks.\\\"\",\"old_string\":\"description: \\\"GitHub end-to-end: auth, repos, issues, PR lifecycle, code review, CI/CD, releases. Covers gh and git+curl fallbacks.\\\"\",\"path\":\"/home/thesage/.hermes/skills/github/github-pr-workflow/S…"
    },
    {
      "name": "skill_manage",
      "arguments": "{\"name\":\"codebase-inspection\",\"action\":\"delete\",\"absorbed_into\":\"github-pr-workflow\"}"
    },
    {
      "name": "read_file",
      "arguments": "{\"limit\":40,\"offset\":990,\"path\":\"/home/thesage/.hermes/skills/autonomous-ai-agents/hermes-agent/SKILL.md\"}"
    },
    {
      "name": "patch",
      "arguments": "{\"mode\":\"replace\",\"new_string\":\"### Extending the system prompt's execution-environment block\\n\\n... (existing section preserved) ...\\n\\n### Commit Conventions\\n\\n```\\ntype: concise subject line\\n\\nOptional body.\\n```\\n\\nTypes: `fix:`, `feat:`, `refactor:`, `docs:`, `chore:`\\n\\n---\\n\\n## Authoring In-Repo Skills\\n\\nGuidelines for writing SKILL.md files that ship with the Hermes package (`skills/\\u…"
    },
    {
      "name": "read_file",
      "arguments": "{\"limit\":120,\"offset\":1000,\"path\":\"/home/thesage/.hermes/skills/autonomous-ai-agents/hermes-agent/SKILL.md\"}"
    },
    {
      "name": "patch",
      "arguments": "{\"path\":\"/home/thesage/.hermes/skills/autonomous-ai-agents/hermes-agent/SKILL.md\",\"mode\":\"replace\",\"new_string\":\"### Extending the system prompt's execution-environment block\\n\\nFactual guidance about the host OS, user home, cwd, terminal backend, and shell (bash vs. PowerShell on Windows) is emitted from `agent/prompt_builder.py::build_environment_hints()`. This is also where the WSL hint and per…"
    },
    {
      "name": "patch",
      "arguments": "{\"mode\":\"replace\",\"new_string\":\"description: \\\"Configure, extend, contribute to, or author skills for Hermes Agent.\\\"\",\"old_string\":\"description: \\\"Configure, extend, or contribute to Hermes Agent.\\\"\",\"path\":\"/home/thesage/.hermes/skills/autonomous-ai-agents/hermes-agent/SKILL.md\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"ls -la /home/thesage/.hermes/skills/.archive/ 2\\u003e/dev/null; echo \\\"---\\\"; ls -la /home/thesage/.hermes/skills/github/ 2\\u003e/dev/null\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"ls -la /home/thesage/.hermes/skills/github/.archive/ 2\\u003e/dev/null; echo \\\"---\\\"; find /home/thesage/.hermes/skills/ -name \\\"*codebase-inspection*\\\" -type d 2\\u003e/dev/null; echo \\\"---\\\"; find /home/thesage/.hermes/skills/ -name \\\"*hermes-agent-skill-authoring*\\\" -type d 2\\u003e/dev/null\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"find /home/thesage/.hermes/skills/ -name \\\"codebase-inspection\\\" -type d 2\\u003e/dev/null; find /home/thesage/.hermes/skills/ -name \\\"*codebase*\\\" 2\\u003e/dev/null\"}"
    },
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      "name": "terminal",
      "arguments": "{\"command\":\"ls -la /home/thesage/.hermes/skills/software-development/ 2\\u003e/dev/null; echo \\\"---\\\"; find /home/thesage/.hermes/skills/ -type d -name \\\"*authoring*\\\" 2\\u003e/dev/null; echo \\\"---\\\"; find /home/thesage/.hermes/skills/ -type d -name \\\"*codebase*\\\" 2\\u003e/dev/null\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"find /home/thesage/.hermes/skills/ -name \\\"*codebase-inspection*\\\" 2\\u003e/dev/null; echo \\\"---\\\"; find /home/thesage/.hermes/ -name \\\"*codebase*\\\" 2\\u003e/dev/null; echo \\\"---\\\"; find /home/thesage/.hermes/ -name \\\"*hermes-agent-skill-authoring*\\\" 2\\u003e/dev/null\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"find /home/thesage/.hermes/skills/ -type d | grep -i \\\"archive\\\" 2\\u003e/dev/null; echo \\\"---\\\"; ls -laR /home/thesage/.hermes/skills/.archive/ 2\\u003e/dev/null | head -30\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"find /home/thesage/.hermes/skills/.archive/ -type d | head -30; echo \\\"---\\\"; ls -la /home/thesage/.hermes/skills/.archive/ | head -20\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"find /home/thesage/.hermes/skills/ -type d -name \\\"codebase-inspection\\\" 2\\u003e/dev/null; echo \\\"---\\\"; find /home/thesage/.hermes/skills/ -name \\\"codebase-inspection\\\" 2\\u003e/dev/null; echo \\\"---\\\"; ls -la /home/thesage/.hermes/skills/github/.archive/ 2\\u003e/dev/null\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"ls -la /home/thesage/.hermes/skills/github/ 2\\u003e/dev/null; echo \\\"---\\\"; ls -la /home/thesage/.hermes/skills/software-development/ 2\\u003e/dev/null\"}"
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      "name": "terminal",
      "arguments": "{\"command\":\"find /home/thesage/.hermes/ -type d -name \\\"*codebase-inspection*\\\" 2\\u003e/dev/null; echo \\\"---\\\"; find /home/thesage/.hermes/ -name \\\"*codebase-inspection*\\\" 2\\u003e/dev/null\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"find /home/thesage/.hermes/skills/ -maxdepth 3 -type d | sort | grep -i \\\"codebase\\\\|authoring\\\"\"}"
    },
    {
      "name": "skill_manage",
      "arguments": "{\"action\":\"delete\",\"name\":\"hermes-agent-skill-authoring\",\"absorbed_into\":\"hermes-agent\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"find /home/thesage/.hermes/skills/ -maxdepth 3 -type d | sort | grep -i \\\"codebase\\\\|authoring\\\"\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"ls -la /home/thesage/.hermes/skills/github/codebase-inspection 2\\u003e/dev/null; echo \\\"EXIT:$?\\\"; ls -la /home/thesage/.hermes/skills/software-development/hermes-agent-skill-authoring 2\\u003e/dev/null; echo \\\"EXIT:$?\\\"\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"find /home/thesage/.hermes/skills/ -type d | grep -i \\\"codebase\\\\|authoring\\\" 2\\u003e/dev/null; echo \\\"---\\\"; find /home/thesage/.hermes/skills/ -name \\\"codebase-inspection\\\" 2\\u003e/dev/null; echo \\\"---\\\"; find /home/thesage/.hermes/skills/ -name \\\"hermes-agent-skill-authoring\\\" 2\\u003e/dev/null\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"find /home/thesage/.hermes/skills/ -maxdepth 2 -type d | grep -v \\\"\\\\.archive$\\\" | grep -v \\\"/$\\\" | sort\"}"
    },
    {
      "name": "terminal",
      "arguments": "{\"command\":\"skills_list_output=$(ls /home/thesage/.hermes/skills/ -d */* | grep -v '\\\\.archive' | grep -v '/$' | sort); echo \\\"$skills_list_output\\\"; echo \\\"---\\\"; echo \\\"Total active skill directories (excluding .archive and category level):\\\"; echo \\\"$skills_list_output\\\" | wc -l\"}"
    }
  ]
}